pisa.stages package

Subpackages

• pisa.stages.absorption package
  • Submodules
  • pisa.stages.absorption.earth_absorption module
    • FLAV_BAR_STR_MAPPING
    • calculate_survivalprob()
    • earth_absorption
      • earth_absorption.apply_function()
      • earth_absorption.calculate_xsections()
      • earth_absorption.compute_function()
      • earth_absorption.setup_function()
    • init_test()
  • Module contents
• pisa.stages.aeff package
  • Submodules
  • pisa.stages.aeff.aeff module
    • aeff
      • aeff.apply_function()
    • init_test()
  • pisa.stages.aeff.param module
    • init_test()
    • load_aeff_param()
    • param
      • param.apply_function()
  • pisa.stages.aeff.weight module
    • init_test()
    • weight
      • weight.apply_function()
  • pisa.stages.aeff.weight_hnl module
    • init_test()
    • re_weight_hnl()
    • weight_hnl
      • weight_hnl.apply_function()
  • Module contents
• pisa.stages.background package
  • Submodules
  • pisa.stages.background.atm_muons module
    • atm_muons
      • atm_muons.apply_function()
      • atm_muons.setup_function()
  • Module contents
• pisa.stages.data package
  • Submodules
  • pisa.stages.data.csv_data_hist module
    • csv_data_hist
      • csv_data_hist.setup_function()
    • init_test()
  • pisa.stages.data.csv_icc_hist module
    • csv_icc_hist
      • csv_icc_hist.apply_function()
      • csv_icc_hist.setup_function()
    • init_test()
  • pisa.stages.data.csv_loader module
    • csv_loader
      • csv_loader.apply_function()
      • csv_loader.setup_function()
    • init_test()
  • pisa.stages.data.grid module
    • grid
      • grid.apply_function()
      • grid.setup_function()
    • init_test()
  • pisa.stages.data.licloader_weighter module
  • pisa.stages.data.meows_loader module
    • init_test()
    • meows_loader
      • meows_loader.apply_function()
      • meows_loader.setup_function()
  • pisa.stages.data.simple_data_loader module
    • init_test()
    • simple_data_loader
      • simple_data_loader.apply_cuts_to_events()
      • simple_data_loader.apply_function()
      • simple_data_loader.load_events()
      • simple_data_loader.record_event_properties()
      • simple_data_loader.setup_function()
  • pisa.stages.data.simple_signal module
    • init_test()
    • simple_signal
      • simple_signal.apply_function()
      • simple_signal.setup_function()
  • pisa.stages.data.sqlite_loader module
    • init_test()
    • sqlite_loader
      • sqlite_loader.add_aeff_weight()
      • sqlite_loader.add_reco()
      • sqlite_loader.add_truth()
      • sqlite_loader.apply_function()
      • sqlite_loader.get_pid_and_interaction_type()
      • sqlite_loader.initialize_weights()
      • sqlite_loader.query_database()
      • sqlite_loader.setup_function()
  • pisa.stages.data.toy_event_generator module
    • init_test()
    • toy_event_generator
      • toy_event_generator.apply_function()
      • toy_event_generator.setup_function()
  • Module contents
• pisa.stages.discr_sys package
  • Submodules
  • pisa.stages.discr_sys.csv_hypersurfaces module
    • csv_hypersurfaces
      • csv_hypersurfaces.apply_function()
      • csv_hypersurfaces.compute_function()
      • csv_hypersurfaces.get_corr_factors()
      • csv_hypersurfaces.setup_function()
  • pisa.stages.discr_sys.hypersurfaces module
    • hypersurfaces
      • hypersurfaces.apply_function()
      • hypersurfaces.compute_function()
      • hypersurfaces.setup_function()
  • pisa.stages.discr_sys.ultrasurfaces module
    • get_us_grouping_from_container_name()
    • init_test()
    • ultrasurfaces
      • ultrasurfaces.apply_function()
      • ultrasurfaces.compute_function()
      • ultrasurfaces.setup_function()
  • Module contents
• pisa.stages.flux package
  • Submodules
  • pisa.stages.flux.airs module
  • pisa.stages.flux.astrophysical module
    • apply_sys_loop()
    • astrophysical
      • astrophysical.apply_function()
      • astrophysical.compute_function()
      • astrophysical.setup_function()
    • init_test()
    • spectral_index_scale()
  • pisa.stages.flux.barr_simple module
    • apply_ratio_scale()
    • apply_sys_kernel()
    • barr_simple
      • barr_simple.compute_function()
      • barr_simple.setup_function()
    • init_test()
    • spectral_index_scale()
  • pisa.stages.flux.daemon_flux module
    • daemon_flux
      • daemon_flux.compute_function()
      • daemon_flux.setup_function()
    • evaluate_flux_map()
    • init_test()
    • make_2d_flux_map()
  • pisa.stages.flux.hillasg module
    • hillasg
      • hillasg.compute_function()
      • hillasg.setup_function()
    • init_test()
  • pisa.stages.flux.honda_ip module
    • honda_ip
      • honda_ip.compute_function()
      • honda_ip.setup_function()
    • init_test()
  • pisa.stages.flux.mceq_barr module
    • apply_sys_loop()
    • init_test()
    • mceq_barr
      • mceq_barr.antipion_production()
      • mceq_barr.compute_function()
      • mceq_barr.setup_function()
    • spectral_index_scale()
  • pisa.stages.flux.mceq_barr_red module
    • apply_sys_loop()
    • init_test()
    • mceq_barr_red
      • mceq_barr_red.antipion_production()
      • mceq_barr_red.compute_function()
      • mceq_barr_red.setup_function()
    • spectral_index_scale()
  • Module contents
• pisa.stages.likelihood package
  • Submodules
  • pisa.stages.likelihood.generalized_llh_params module
    • generalized_llh_params
      • generalized_llh_params.apply_function()
      • generalized_llh_params.setup_function()
    • init_test()
  • Module contents
• pisa.stages.osc package
  • Subpackages
    • pisa.stages.osc.prob3numba package
      • Submodules
      • pisa.stages.osc.prob3numba.numba_osc_hostfuncs module
      • pisa.stages.osc.prob3numba.numba_osc_kernels module
      • pisa.stages.osc.prob3numba.numba_osc_tests module
      • pisa.stages.osc.prob3numba.test_numba module
      • Module contents
  • Submodules
  • pisa.stages.osc.decay_params module
    • DecayParams
      • DecayParams.decay_alpha3
      • DecayParams.decay_matrix
      • DecayParams.decay_alpha3
      • DecayParams.decay_matrix
  • pisa.stages.osc.decoherence module
    • DecoherenceParams
    • calc_decoherence_probs()
    • decoherence
      • decoherence.apply_function()
      • decoherence.calc_probs()
      • decoherence.compute_function()
      • decoherence.setup_function()
    • init_test()
  • pisa.stages.osc.external module
    • external
      • external.apply_function()
      • external.compute_function()
      • external.setup_function()
    • init_test()
  • pisa.stages.osc.globes module
    • globes
      • globes.apply_function()
      • globes.calc_prob_e_mu()
      • globes.calc_prob_nonsterile()
      • globes.compute_function()
      • globes.setup_function()
    • init_test()
  • pisa.stages.osc.layers module
    • Layers
      • Layers.max_layers
      • Layers.n_layers
      • Layers.density
      • Layers.density_neutron_weighted
      • Layers.distance
      • Layers.calcLayers()
      • Layers.calcPathLength()
      • Layers.computeMinLengthToLayers()
      • Layers.density
      • Layers.density_neutron_weighted
      • Layers.distance
      • Layers.n_layers
      • Layers.scaling()
      • Layers.setElecFrac()
      • Layers.weight_density_to_YeFrac()
      • Layers.weight_density_to_YnFrac()
    • extCalcLayers()
  • pisa.stages.osc.lri_params module
    • LRIParams
      • LRIParams.potential_matrix_emu
      • LRIParams.potential_matrix_etau
      • LRIParams.potential_matrix_mutau
      • LRIParams.v_lri
  • pisa.stages.osc.nsi_params module
    • NSIParams
      • NSIParams.eps_matrix
    • StdNSIParams
      • StdNSIParams.eps_matrix
      • StdNSIParams.eps_ee
      • StdNSIParams.eps_emu
      • StdNSIParams.eps_etau
      • StdNSIParams.eps_matrix
      • StdNSIParams.eps_mumu
      • StdNSIParams.eps_mutau
      • StdNSIParams.eps_tautau
    • VacuumLikeNSIParams
      • VacuumLikeNSIParams.alpha1
      • VacuumLikeNSIParams.alpha2
      • VacuumLikeNSIParams.deltansi
      • VacuumLikeNSIParams.eps_ee
      • VacuumLikeNSIParams.eps_emu
      • VacuumLikeNSIParams.eps_etau
      • VacuumLikeNSIParams.eps_matrix
      • VacuumLikeNSIParams.eps_mumu
      • VacuumLikeNSIParams.eps_mutau
      • VacuumLikeNSIParams.eps_prime
      • VacuumLikeNSIParams.eps_scale
      • VacuumLikeNSIParams.eps_tautau
      • VacuumLikeNSIParams.phi12
      • VacuumLikeNSIParams.phi13
      • VacuumLikeNSIParams.phi23
  • pisa.stages.osc.nusquids module
  • pisa.stages.osc.osc_params module
    • OscParams
      • OscParams.deltacp
      • OscParams.mix_matrix
      • OscParams.mix_matrix_complex
      • OscParams.mix_matrix_reparam
      • OscParams.mix_matrix_reparam_complex
      • OscParams.dm_matrix
      • OscParams.deltacp
      • OscParams.dm_matrix
      • OscParams.mix_matrix
      • OscParams.mix_matrix_complex
      • OscParams.mix_matrix_reparam
      • OscParams.mix_matrix_reparam_complex
      • OscParams.sin12
      • OscParams.sin13
      • OscParams.sin14
      • OscParams.sin23
      • OscParams.theta12
      • OscParams.theta13
      • OscParams.theta14
      • OscParams.theta23
  • pisa.stages.osc.prob3 module
    • init_test()
    • prob3
      • prob3.apply_function()
      • prob3.calc_probs()
      • prob3.compute_function()
      • prob3.gen_mat_pot_matrix_complex
      • prob3.nsi_type
      • prob3.reparam_mix_matrix
      • prob3.setup_function()
  • pisa.stages.osc.scaling_params module
    • Core_scaling_w_constrain
      • Core_scaling_w_constrain.core_density_scale
      • Core_scaling_w_constrain.is_descending()
      • Core_scaling_w_constrain.is_positive()
      • Core_scaling_w_constrain.scaling_array
    • Core_scaling_wo_constrain
      • Core_scaling_wo_constrain.core_density_scale
      • Core_scaling_wo_constrain.innermantle_density_scale
      • Core_scaling_wo_constrain.middlemantle_density_scale
      • Core_scaling_wo_constrain.scaling_factor_array
    • Mass_scaling
      • Mass_scaling.density_scale
  • pisa.stages.osc.two_nu_osc module
    • calc_probs()
    • init_test()
    • two_nu_osc
      • two_nu_osc.apply_function()
  • Module contents
• pisa.stages.reco package
  • Submodules
  • pisa.stages.reco.resolutions module
    • init_test()
    • resolutions
      • resolutions.setup_function()
  • pisa.stages.reco.simple_param module
    • dict_lookup_wildcard()
    • energy_dependent_sigma()
    • has_muon()
    • logistic_function()
    • simple_param
      • simple_param.setup_function()
    • simple_pid_parameterization()
    • simple_reco_coszen_parameterization()
    • simple_reco_energy_parameterization()
    • visible_energy_correction()
  • Module contents
• pisa.stages.utils package
  • Submodules
  • pisa.stages.utils.add_indices module
    • add_indices
      • add_indices.setup_function()
  • pisa.stages.utils.adhoc_sys module
    • adhoc_sys
      • adhoc_sys.apply_function()
      • adhoc_sys.setup_function()
    • init_test()
  • pisa.stages.utils.bootstrap module
    • bootstrap
      • bootstrap.apply_function()
      • bootstrap.setup_function()
    • init_test()
    • insert_bootstrap_after_data_loader()
    • test_bootstrap()
  • pisa.stages.utils.fix_error module
    • fix_error
      • fix_error.apply_function()
      • fix_error.compute_function()
      • fix_error.setup_function()
  • pisa.stages.utils.hist module
    • hist
      • hist.apply_function()
      • hist.setup_function()
    • init_test()
  • pisa.stages.utils.kde module
    • init_test()
    • kde
      • kde.apply()
      • kde.apply_function()
      • kde.setup_function()
  • pisa.stages.utils.kfold module
    • init_test()
    • kfold
      • kfold.apply_function()
      • kfold.setup_function()
  • pisa.stages.utils.set_variance module
    • apply_floor()
    • init_test()
    • set_constant()
    • set_variance
      • set_variance.apply_function()
      • set_variance.compute_function()
      • set_variance.setup_function()
  • Module contents
• pisa.stages.xsec package
  • Submodules
  • pisa.stages.xsec.correct_charm_y module
    • correct_charm_y
      • correct_charm_y.apply_function()
      • correct_charm_y.setup_function()
    • init_test()
  • pisa.stages.xsec.dis_sys module
    • dis_sys
      • dis_sys.apply_function()
      • dis_sys.setup_function()
    • init_test()
  • pisa.stages.xsec.genie_sys module
    • apply_genie_sys()
    • genie_sys
      • genie_sys.apply_function()
      • genie_sys.setup_function()
    • init_test()
  • pisa.stages.xsec.nutau_xsec module
    • init_test()
    • nutau_xsec
      • nutau_xsec.apply_function()
      • nutau_xsec.compute_function()
      • nutau_xsec.setup_function()
  • Module contents

Module contents